Detailed information of SNP:
|
SNP ID:
sf0143241867(Gbrowse)
Chromosome: chr01 Position: 43241867 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 90.47% | 9.53% |
| All Indica | 744 | 83.33% | 16.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 85.88% | 14.12% |
| Indica II | 207 | 81.16% | 18.84% |
| Indica Intermediate | 197 | 81.22% | 18.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143241867 | C->T | INTERGENIC | None |