Detailed information of SNP:
|
SNP ID:
sf0200045002(Gbrowse)
Chromosome: chr02 Position: 45002 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 97.83% | 2.17% |
| All Indica | 767 | 96.48% | 3.52% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 358 | 95.25% | 4.75% |
| Indica II | 202 | 99.01% | 0.99% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200045002 | G->A | INTERGENIC | None |