Detailed information of SNP:
|
SNP ID:
sf0200213199(Gbrowse)
Chromosome: chr02 Position: 213199 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 58.56% | 41.44% |
| All Indica | 797 | 34.88% | 65.12% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 30.48% | 69.52% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200213199 | G->A | INTERGENIC | None |