Detailed information of SNP:
|
SNP ID:
sf0200274146(Gbrowse)
Chromosome: chr02 Position: 274146 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 32.67% | 67.33% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200274146 | G->A | INTERGENIC | None |