Detailed information of SNP:
|
SNP ID:
sf0200277506(Gbrowse)
Chromosome: chr02 Position: 277506 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1193 | 90.28% | 9.72% |
| All Indica | 719 | 99.58% | 0.42% |
| All Japonica | 365 | 75.07% | 24.93% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 329 | 99.70% | 0.30% |
| Indica II | 197 | 98.98% | 1.02% |
| Indica Intermediate | 193 | 100.00% | 0.00% |
| Temperate Japonica | 244 | 65.57% | 34.43% |
| Tropical Japonica | 72 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200277506 | A->G | INTERGENIC | None |