Detailed information of SNP:
|
SNP ID:
sf0200334269(Gbrowse)
Chromosome: chr02 Position: 334269 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 92.94% | 7.06% |
| All Indica | 785 | 90.70% | 9.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 200 | 78.00% | 22.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200334269 | C->T | INTERGENIC | None |