Detailed information of SNP:
|
SNP ID:
sf0200335580(Gbrowse)
Chromosome: chr02 Position: 335580 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 86.94% | 13.06% |
| All Indica | 744 | 79.03% | 20.97% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 79.65% | 20.35% |
| Indica II | 199 | 72.36% | 27.64% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200335580 | A->T | INTERGENIC | None |