Detailed information of SNP:
|
SNP ID:
sf0200349177(Gbrowse)
Chromosome: chr02 Position: 349177 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.96% | 41.04% |
| All Indica | 799 | 33.54% | 66.46% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 375 | 36.80% | 63.20% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200349177 | A->G | INTERGENIC | None |