Detailed information of SNP:
|
SNP ID:
sf0200388906(Gbrowse)
Chromosome: chr02 Position: 388906 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 83.97% | 16.03% |
| All Indica | 797 | 73.15% | 26.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200388906 | T->G | INTERGENIC | None |