Detailed information of SNP:
|
SNP ID:
sf0200390756(Gbrowse)
Chromosome: chr02 Position: 390756 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 52.83% | 47.17% |
| All Indica | 799 | 22.28% | 77.72% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 375 | 19.20% | 80.80% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 16.11% | 83.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200390756 | C->T | INTERGENIC | None |