Detailed information of SNP:
|
SNP ID:
sf0200456649(Gbrowse)
Chromosome: chr02 Position: 456649 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.04% | 49.96% |
| All Indica | 798 | 78.32% | 21.68% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200456649 | G->C | LOC_Os02g01825(LOC_Os02g01825.1) | Non-Synonymous SNP |