Detailed information of SNP:
|
SNP ID:
sf0200459861(Gbrowse)
Chromosome: chr02 Position: 459861 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 64.97% | 35.03% |
| All Indica | 793 | 47.41% | 52.59% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 372 | 61.02% | 38.98% |
| Indica II | 210 | 49.05% | 50.95% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200459861 | T->C | LOC_Os02g01830(LOC_Os02g01830.1) | UTR_5_PRIME |