Detailed information of SNP:
|
SNP ID:
sf0200463356(Gbrowse)
Chromosome: chr02 Position: 463356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 92.03% | 7.97% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200463356 | C->T | LOC_Os02g01840(LOC_Os02g01840.1) | INTRON |