Detailed information of SNP:
|
SNP ID:
sf0200466747(Gbrowse)
Chromosome: chr02 Position: 466747 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.84% | 44.16% |
| All Indica | 795 | 27.67% | 72.33% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 371 | 10.24% | 89.76% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 13.27% | 86.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200466747 | C->T | INTERGENIC | None |