Detailed information of SNP:



SNP ID: sf0200471574(Gbrowse)

Chromosome: chr02

Position: 471574
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 93.35% 6.65%
All Indica793 88.27% 11.73%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 85.92% 14.08%
Indica Intermediate205 70.73% 29.27%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0200471574 C->T LOC_Os02g01850(LOC_Os02g01850.1) Synonymous