Detailed information of SNP:
|
SNP ID:
sf0200487383(Gbrowse)
Chromosome: chr02 Position: 487383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 93.63% | 6.37% |
| All Indica | 789 | 99.87% | 0.13% |
| All Japonica | 398 | 79.90% | 20.10% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 264 | 72.35% | 27.65% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 86.79% | 13.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200487383 | G->A | LOC_Os02g01880(LOC_Os02g01880.1) | Synonymous |