Detailed information of SNP:
|
SNP ID:
sf0200488786(Gbrowse)
Chromosome: chr02 Position: 488786 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.03% | 38.97% |
| All Indica | 799 | 40.30% | 59.70% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 11.20% | 88.80% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200488786 | G->A | INTERGENIC | None |