Detailed information of SNP:
|
SNP ID:
sf0200600738(Gbrowse)
Chromosome: chr02 Position: 600738 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1285 | 79.69% | 20.31% |
| All Indica | 693 | 68.54% | 31.46% |
| All Japonica | 492 | 97.15% | 2.85% |
| Aus | 52 | 71.15% | 28.85% |
| Indica I | 328 | 73.78% | 26.22% |
| Indica II | 186 | 60.22% | 39.78% |
| Indica Intermediate | 179 | 67.60% | 32.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200600738 | A->G | LOC_Os02g02060(LOC_Os02g02060.1) | Non-Synonymous SNP |