Detailed information of SNP:
|
SNP ID:
sf0200603442(Gbrowse)
Chromosome: chr02 Position: 603442 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 59.71% | 40.29% |
| All Indica | 708 | 34.89% | 65.11% |
| All Japonica | 494 | 96.56% | 3.44% |
| Aus | 54 | 59.26% | 40.74% |
| Indica I | 313 | 36.42% | 63.58% |
| Indica II | 202 | 40.59% | 59.41% |
| Indica Intermediate | 193 | 26.42% | 73.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 33 | 60.61% | 39.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200603442 | C->T | LOC_Os02g02060(LOC_Os02g02060.1) | Synonymous |