Detailed information of SNP:
|
SNP ID:
sf0200617583(Gbrowse)
Chromosome: chr02 Position: 617583 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.39% | 39.61% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200617583 | A->G | INTERGENIC | None |