Detailed information of SNP:
|
SNP ID:
sf0200620734(Gbrowse)
Chromosome: chr02 Position: 620734 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 54.89% | 45.11% |
| All Indica | 786 | 25.19% | 74.81% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 46 | 78.26% | 21.74% |
| Indica I | 374 | 9.09% | 90.91% |
| Indica II | 206 | 48.06% | 51.94% |
| Indica Intermediate | 206 | 31.55% | 68.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200620734 | C->T | LOC_Os02g02100(LOC_Os02g02100.1) | Non-Synonymous SNP |