Detailed information of SNP:
|
SNP ID:
sf0200630803(Gbrowse)
Chromosome: chr02 Position: 630803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 61.08% | 38.92% |
| All Indica | 794 | 34.13% | 65.87% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 11.83% | 88.17% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200630803 | C->T | INTERGENIC | None |