Detailed information of SNP:
|
SNP ID:
sf0200657074(Gbrowse)
Chromosome: chr02 Position: 657074 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1299 | 95.54% | 4.46% |
| All Indica | 792 | 97.73% | 2.27% |
| All Japonica | 385 | 93.51% | 6.49% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 265 | 97.36% | 2.64% |
| Tropical Japonica | 70 | 87.14% | 12.86% |
| Japonica Intermediate | 50 | 82.00% | 18.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200657074 | T->G | LOC_Os02g02170(LOC_Os02g02170.1) | UTR_3_PRIME |