Detailed information of SNP:
|
SNP ID:
sf0200658088(Gbrowse)
Chromosome: chr02 Position: 658088 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 96.82% | 3.18% |
| All Indica | 764 | 96.34% | 3.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 364 | 98.35% | 1.65% |
| Indica II | 191 | 91.10% | 8.90% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200658088 | C->A | INTERGENIC | None |