Detailed information of SNP:
|
SNP ID:
sf0200713263(Gbrowse)
Chromosome: chr02 Position: 713263 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 79.97% | 20.03% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 486 | 52.26% | 47.74% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 326 | 57.98% | 42.02% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200713263 | A->T | LOC_Os02g02230(LOC_Os02g02230.1) | INTRON |