Detailed information of SNP:
|
SNP ID:
sf0200713319(Gbrowse)
Chromosome: chr02 Position: 713319 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 80.44% | 19.56% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 494 | 51.82% | 48.18% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 42.51% | 57.49% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200713319 | G->A | LOC_Os02g02230(LOC_Os02g02230.1) | INTRON |