Detailed information of SNP:
|
SNP ID:
sf0200741581(Gbrowse)
Chromosome: chr02 Position: 741581 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.34% | 37.66% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200741581 | A->G | INTERGENIC | None |