Detailed information of SNP:
|
SNP ID:
sf0200779191(Gbrowse)
Chromosome: chr02 Position: 779191 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.44% | 39.56% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200779191 | A->G | INTERGENIC | None |