Detailed information of SNP:
|
SNP ID:
sf0200799086(Gbrowse)
Chromosome: chr02 Position: 799086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 798 | 30.45% | 69.55% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 211 | 23.70% | 76.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200799086 | G->A | INTERGENIC | None |