Detailed information of SNP:
|
SNP ID:
sf0200799535(Gbrowse)
Chromosome: chr02 Position: 799535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.35% | 43.65% |
| All Indica | 798 | 28.07% | 71.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200799535 | C->T | INTERGENIC | None |