Detailed information of SNP:
|
SNP ID:
sf0200799836(Gbrowse)
Chromosome: chr02 Position: 799836 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200799836 | T->C | INTERGENIC | None |