Detailed information of SNP:
|
SNP ID:
sf0200800465(Gbrowse)
Chromosome: chr02 Position: 800465 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.28% | 40.72% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200800465 | A->G | INTERGENIC | None |