Detailed information of SNP:
|
SNP ID:
sf0200800683(Gbrowse)
Chromosome: chr02 Position: 800683 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 84.18% | 15.82% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 496 | 65.32% | 34.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 334 | 73.35% | 26.65% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200800683 | C->T | INTERGENIC | None |