Detailed information of SNP:
|
SNP ID:
sf0200811680(Gbrowse)
Chromosome: chr02 Position: 811680 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 96.91% | 3.09% |
| All Indica | 770 | 94.68% | 5.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 98.09% | 1.91% |
| Indica II | 197 | 84.26% | 15.74% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200811680 | G->A | INTERGENIC | None |