Detailed information of SNP:
|
SNP ID:
sf0200812022(Gbrowse)
Chromosome: chr02 Position: 812022 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 95.05% | 4.95% |
| All Indica | 780 | 94.23% | 5.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 67.21% | 32.79% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 201 | 83.08% | 16.92% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200812022 | G->T | INTERGENIC | None |