Detailed information of SNP:
|
SNP ID:
sf0200832081(Gbrowse)
Chromosome: chr02 Position: 832081 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.39% | 46.61% |
| All Indica | 798 | 19.17% | 80.83% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 6.13% | 93.87% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200832081 | G->A | INTERGENIC | None |