Detailed information of SNP:



SNP ID: sf0200832081(Gbrowse)

Chromosome: chr02

Position: 832081
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 53.39% 46.61%
All Indica798 19.17% 80.83%
All Japonica496 99.60% 0.40%
Aus67 98.51% 1.49%
Indica I375 6.13% 93.87%
Indica II212 42.92% 57.08%
Indica Intermediate211 18.48% 81.52%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica93 97.85% 2.15%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 73.17% 26.83%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0200832081 G->A INTERGENIC None