Detailed information of SNP:
|
SNP ID:
sf0200883732(Gbrowse)
Chromosome: chr02 Position: 883732 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200883732 | C->T | INTERGENIC | None |