Detailed information of SNP:
|
SNP ID:
sf0200903122(Gbrowse)
Chromosome: chr02 Position: 903122 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 54.49% | 45.51% |
| All Indica | 796 | 92.84% | 7.16% |
| All Japonica | 494 | 2.23% | 97.77% |
| Aus | 61 | 4.92% | 95.08% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 91 | 5.49% | 94.51% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 29.73% | 70.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200903122 | G->A | LOC_Os02g02524(LOC_Os02g02524.1) | INTRON |