Detailed information of SNP:
|
SNP ID:
sf0200923972(Gbrowse)
Chromosome: chr02 Position: 923972 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 97.03% | 2.97% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 401 | 95.01% | 4.99% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 267 | 97.00% | 3.00% |
| Tropical Japonica | 79 | 93.67% | 6.33% |
| Japonica Intermediate | 55 | 87.27% | 12.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200923972 | T->C | INTERGENIC | None |