Detailed information of SNP:
|
SNP ID:
sf0200970312(Gbrowse)
Chromosome: chr02 Position: 970312 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.42% | 46.58% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0200970312 | A->C | LOC_Os02g02640(LOC_Os02g02640.1) | Non-Synonymous SNP |