Detailed information of SNP:
|
SNP ID:
sf0201029471(Gbrowse)
Chromosome: chr02 Position: 1029471 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.01% | 35.99% |
| All Indica | 797 | 36.89% | 63.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 11.53% | 88.47% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201029471 | G->A | INTERGENIC | None |