Detailed information of SNP:
|
SNP ID:
sf0201061873(Gbrowse)
Chromosome: chr02 Position: 1061873 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.74% | 8.26% |
| All Indica | 797 | 86.83% | 13.17% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201061873 | C->A | INTERGENIC | None |