Detailed information of SNP:
|
SNP ID:
sf0201096474(Gbrowse)
Chromosome: chr02 Position: 1096474 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.49% | 49.51% |
| All Indica | 797 | 86.70% | 13.30% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201096474 | T->C | INTERGENIC | None |