Detailed information of SNP:
|
SNP ID:
sf0201096822(Gbrowse)
Chromosome: chr02 Position: 1096822 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201096822 | A->G | INTERGENIC | None |