Detailed information of SNP:
|
SNP ID:
sf0201099179(Gbrowse)
Chromosome: chr02 Position: 1099179 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1203 | 92.60% | 7.40% |
| All Indica | 788 | 96.19% | 3.81% |
| All Japonica | 300 | 83.33% | 16.67% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 195 | 98.97% | 1.03% |
| Tropical Japonica | 64 | 32.81% | 67.19% |
| Japonica Intermediate | 41 | 87.80% | 12.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201099179 | C->T | INTERGENIC | None |