Detailed information of SNP:
|
SNP ID:
sf0201143150(Gbrowse)
Chromosome: chr02 Position: 1143150 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 85.28% | 14.72% |
| All Indica | 782 | 80.69% | 19.31% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 202 | 80.69% | 19.31% |
| Indica Intermediate | 206 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201143150 | T->G | INTERGENIC | None |