Detailed information of SNP:
|
SNP ID:
sf0201493818(Gbrowse)
Chromosome: chr02 Position: 1493818 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.59% | 12.41% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201493818 | A->G | INTERGENIC | None |