Detailed information of SNP:
|
SNP ID:
sf0201504554(Gbrowse)
Chromosome: chr02 Position: 1504554 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 95.51% | 4.49% |
| All Indica | 762 | 92.39% | 7.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 97.28% | 2.72% |
| Indica II | 196 | 92.35% | 7.65% |
| Indica Intermediate | 198 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201504554 | C->T | INTERGENIC | None |