Detailed information of SNP:
|
SNP ID:
sf0201569754(Gbrowse)
Chromosome: chr02 Position: 1569754 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.54% | 8.46% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201569754 | A->T | INTERGENIC | None |