Detailed information of SNP:
|
SNP ID:
sf0201776356(Gbrowse)
Chromosome: chr02 Position: 1776356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 92.64% | 7.36% |
| All Indica | 739 | 87.14% | 12.86% |
| All Japonica | 459 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 351 | 77.49% | 22.51% |
| Indica II | 193 | 96.37% | 3.63% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 312 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0201776356 | C->T | LOC_Os02g04080(LOC_Os02g04080.1) | INTRON |